The AC whine is very common. Some folks have had it serviced per an advisory that unfortunately is on a phone of mine that just broke. Do a search on air conditioning or noise. The cars do run rough for the first minute or so, even the owners manual warns of this; but mine doesn't miss.
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Regards,
Bodean
(North TX, 2007 "Cool" GXP Automatic with Monsoon System, Escort 9500ic, Custom Wind Restrictor, K&N air filter, Hahn BSR Tune & Hahn IC, Dual Horns, Kappasphere luggage rack (when needed), Flash2Pass, MagnaFlow muffler, JLe430 amp with Pioneer Components & Blaupunkt rear, Crossfire amp with Sony Xplode Sub, DDM ProBeam, ADR Propulsion Wheels, Solo Hi-Flow CAT, Halo Demon Eyes), Hide-Away plates, Cherry dashboard